Hello,I built a very simple model, a hexahedron with an ellipsoid outside. But when I execute “Finalize run configuration and save project”, I always get a lot of error messages. But I can still run the next simulation.
There are error messages such as
“error when result is saved probably because of concurrent disc access, the result will be saved back during the next time step",
"ERROR c.a.p.p.n.f.DatafieldWriter [DatafieldWriter.java:92] Error writing datafield: VolInteracFlag”
Does anyone know what causes this error? I attach my geo, and parts of debug.log file.
my geo file:
cl__1 = 0.02;
cl__2 = 0.1;
Point(1) = {0.08, -0.15, -0.13, cl__1};
Point(2) = {0.08, -0.15 , 0.08, cl__1};
Point(3) = {-0.08, -0.15 , 0.08, cl__1};
Point(4) = {-0.08, -0.15 , -0.13, cl__1};
Point(5) = {-0.17, 0, 0.08, cl__1};
Point(6) = {-0.17, 0, -0.13, cl__1};
Point(7) = {-0.08, 0.15 , 0.08, cl__1};
Point(8) = {-0.08, 0.15 , -0.13, cl__1};
Point(9) = {0.08, 0.15, 0.08, cl__1};
Point(10) = {0.08, 0.15, -0.13, cl__1};
Point(11) = {0.17, 0, 0.08, cl__1};
Point(12) = {0.17, 0, -0.13, cl__1};
Point(201) = {1, 0, 0, cl__2};
Point(202) = {-1, 0, 0, cl__2};
Point(203) = {0, 1, 0, cl__2};
Point(204) = {0, -1, 0, cl__2};
Point(205) = {0, 0, 0.45, cl__2};
Point(206) = {0, 0, -0.45, cl__2};
Point(287) = {0, 0, 0, cl__1};
Line(1) = {1, 2};
Line(2) = {3, 2};
Line(3) = {4, 3};
Line(4) = {4, 1};
Line(5) = {5, 3};
Line(6) = {6, 5};
Line(7) = {6, 4};
Line(8) = {7, 5};
Line(9) = {8, 7};
Line(10) = {8, 6};
Line(11) = {9, 7};
Line(12) = {10, 9};
Line(13) = {10, 8};
Line(14) = {11, 9};
Line(15) = {12, 11};
Line(16) = {12, 10};
Line(17) = {2, 11};
Line(18) = {1, 12};
Ellipse(37) = {204, 287, 203, 205};
Ellipse(38) = {205, 287, 203, 203};
Ellipse(39) = {203, 287, 206, 206};
Ellipse(40) = {206, 287, 204, 204};
Ellipse(41) = {205, 287, 201, 201};
Ellipse(42) = {201, 287, 206, 206};
Ellipse(43) = {206, 287, 202, 202};
Ellipse(44) = {202, 287, 205, 205};
Circle(45) = {203, 287, 202};
Circle(46) = {202, 287, 204};
Circle(47) = {204, 287, 201};
Circle(48) = {201, 287, 203};
Line Loop(1) = {1, -2, -3, 4};
Plane Surface(1) = {1};
Line Loop(2) = {3, -5, -6, 7};
Plane Surface(2) = {2};
Line Loop(3) = {6, -8, -9, 10};
Plane Surface(3) = {3};
Line Loop(4) = {9, -11, -12, 13};
Plane Surface(4) = {4};
Line Loop(5) = {12, -14, -15, 16};
Plane Surface(5) = {5};
Line Loop(6) = {15, -17, -1, 18};
Plane Surface(6) = {6};
Line Loop(7) = {4, 18, 16, 13, 10, 7};
Plane Surface(7) = {7};
Line Loop(8) = {2, 17, 14, 11, 8, 5};
Plane Surface(8) = {8};
Line Loop(50) = {41, 48, -38};
Ruled Surface(50) = {50};
Line Loop(52) = {42, -39, -48};
Ruled Surface(52) = {52};
Line Loop(54) = {43, -45, 39};
Ruled Surface(54) = {54};
Line Loop(56) = {44, 38, 45};
Ruled Surface(56) = {56};
Line Loop(59) = {41, -47, 37};
Ruled Surface(59) = {59};
Line Loop(61) = {42, 40, 47};
Ruled Surface(61) = {61};
Line Loop(63) = {43, 46, -40};
Ruled Surface(63) = {63};
Line Loop(65) = {44, -37, -46};
Ruled Surface(65) = {65};
Surface Loop(1) = {1, 2, 3, 4, 5, 6, 7, 8};
Surface Loop(67) = {50, 52, 61, 63, 54, 56, 65, 59};
Volume(77) = {67, 1};
Physical Surface(68) = {1, 2, 3, 4, 5, 6, 7, 8};
Physical Surface(69) = {50, 52, 54, 56, 59, 61, 63, 65};
Physical Volume(70) = {77};
=========================================================================
part of debug.log
2022-02-27 20:39:23,287 DEBUG BundleController:Project [CommandLogLevel.java:42] Saving SPIS project - null
2022-02-27 20:39:23,582 DEBUG c.a.p.p.n.f.MeshMaskWriter [MeshMaskWriter.java:65] error when result is saved probably because of concurrent disc access, the result will be saved back during the next time step.
java.lang.NullPointerException: null
at com.artenum.penelope.plugin.netcdf.field.MeshMaskWriter.writeMetaData(MeshMaskWriter.java:86) ~[com-artenum-penelope-plugin-netcdf-3.2.4.jar:na]
at com.artenum.penelope.plugin.netcdf.field.MeshMaskWriter.writeMeshMask(MeshMaskWriter.java:55) ~[com-artenum-penelope-plugin-netcdf-3.2.4.jar:na]
at org.keridwen.modelling.data.model.io.writer.DatafieldWriter.writeContent(DatafieldWriter.java:57) [org-keridwen-modelling-data-model-3.6.0.jar:na]
at org.keridwen.core.data.model.impl.DefaultNode.saveNode(DefaultNode.java:188) [org-keridwen-core-data-model-3.0.14.jar:na]
at org.keridwen.core.data.model.impl.DefaultNode.saveNodeAs(DefaultNode.java:201) [org-keridwen-core-data-model-3.0.14.jar:na]
at org.keridwen.core.data.model.io.impl.DefaultTreeWriter.writeChildren(DefaultTreeWriter.java:178) [org-keridwen-core-data-model-3.0.14.jar:na]
at org.keridwen.core.data.model.io.impl.DefaultTreeWriter.writeChildren(DefaultTreeWriter.java:181) [org-keridwen-core-data-model-3.0.14.jar:na]
at org.keridwen.core.data.model.io.impl.DefaultTreeWriter.writeChildren(DefaultTreeWriter.java:181) [org-keridwen-core-data-model-3.0.14.jar:na]
at org.keridwen.core.data.model.io.impl.DefaultTreeWriter.writeChildren(DefaultTreeWriter.java:181) [org-keridwen-core-data-model-3.0.14.jar:na]
at org.keridwen.core.data.model.io.impl.DefaultTreeWriter.writeChildren(DefaultTreeWriter.java:181) [org-keridwen-core-data-model-3.0.14.jar:na]
at org.keridwen.core.data.model.io.impl.DefaultTreeWriter.writeTree(DefaultTreeWriter.java:113) [org-keridwen-core-data-model-3.0.14.jar:na]
at org.keridwen.core.data.model.impl.DefaultDataModel.saveModel(DefaultDataModel.java:128) [org-keridwen-core-data-model-3.0.14.jar:na]
at org.spis.ui.model.SpisModel$$Proxy.saveModel(Unknown Source) [na:na]
at org.spis.ui.project.command.SaveCommand.run(SaveCommand.java:47) [org-spis-ui-project-6.1.0.jar:6.1.0]
at org.spis.ui.project.command.SaveCommand.run(SaveCommand.java:19) [org-spis-ui-project-6.1.0.jar:6.1.0]
at org.keridwen.core.messaging.AbstractCommand.execute(AbstractCommand.java:223) [org-keridwen-core-messaging-3.0.14.jar:na]
at org.keridwen.core.messaging.DefaultBundleController$CallableCommand.call(DefaultBundleController.java:267) [org-keridwen-core-messaging-3.0.14.jar:na]
at java.util.concurrent.FutureTask.run(FutureTask.java:266) [na:1.8.0_202]
at java.util.concurrent.ThreadPoolExecutor.runWorker(ThreadPoolExecutor.java:1149) [na:1.8.0_202]
at java.util.concurrent.ThreadPoolExecutor$Worker.run(ThreadPoolExecutor.java:624) [na:1.8.0_202]
at java.lang.Thread.run(Thread.java:748) [na:1.8.0_202]
ERROR c.a.p.p.n.f.DatafieldWriter [DatafieldWriter.java:92] Error writing datafield: VolInteracFlag
URI: null
isRelative: true
Detailed datafield: AbstractDataField [id=71, name=VolInteracFlag, localisation=POLYHEDRON, isValid=false, timeStamp=-1, unit=SimpleStringUnit [unit=, standardUnit=], meshMask= [id=71, name=, description=, meshElementIds={0, 1, 2, 3, 4, 5, 6, 7, 8, 9, 10,…, 20991, 20992, 20993, 20994, 20995}, meshType=POLYHEDRON], dataArray=nbData: 20996/dimension: 0]
java.lang.NullPointerException: null
at com.artenum.penelope.plugin.netcdf.field.DatafieldWriter.writeMetaData(DatafieldWriter.java:81) [com-artenum-penelope-plugin-netcdf-3.2.4.jar:na]
at com.artenum.penelope.plugin.netcdf.field.DatafieldWriter.writeDatafield(DatafieldWriter.java:56) [com-artenum-penelope-plugin-netcdf-3.2.4.jar:na]
at org.keridwen.modelling.data.model.io.writer.DatafieldWriter.writeContent(DatafieldWriter.java:67) [org-keridwen-modelling-data-model-3.6.0.jar:na]
at org.keridwen.core.data.model.impl.DefaultNode.saveNode(DefaultNode.java:188) [org-keridwen-core-data-model-3.0.14.jar:na]
at org.keridwen.core.data.model.impl.DefaultNode.saveNodeAs(DefaultNode.java:201) [org-keridwen-core-data-model-3.0.14.jar:na]
at org.keridwen.core.data.model.io.impl.DefaultTreeWriter.writeChildren(DefaultTreeWriter.java:178) [org-keridwen-core-data-model-3.0.14.jar:na]
at org.keridwen.core.data.model.io.impl.DefaultTreeWriter.writeChildren(DefaultTreeWriter.java:181) [org-keridwen-core-data-model-3.0.14.jar:na]
at org.keridwen.core.data.model.io.impl.DefaultTreeWriter.writeChildren(DefaultTreeWriter.java:181) [org-keridwen-core-data-model-3.0.14.jar:na]
at org.keridwen.core.data.model.io.impl.DefaultTreeWriter.writeChildren(DefaultTreeWriter.java:181) [org-keridwen-core-data-model-3.0.14.jar:na]
at org.keridwen.core.data.model.io.impl.DefaultTreeWriter.writeChildren(DefaultTreeWriter.java:181) [org-keridwen-core-data-model-3.0.14.jar:na]
at org.keridwen.core.data.model.io.impl.DefaultTreeWriter.writeTree(DefaultTreeWriter.java:113) [org-keridwen-core-data-model-3.0.14.jar:na]
at org.keridwen.core.data.model.impl.DefaultDataModel.saveModel(DefaultDataModel.java:128) [org-keridwen-core-data-model-3.0.14.jar:na]
at org.spis.ui.model.SpisModel$$Proxy.saveModel(Unknown Source) [na:na]
at org.spis.ui.project.command.SaveCommand.run(SaveCommand.java:47) [org-spis-ui-project-6.1.0.jar:6.1.0]
at org.spis.ui.project.command.SaveCommand.run(SaveCommand.java:19) [org-spis-ui-project-6.1.0.jar:6.1.0]
at org.keridwen.core.messaging.AbstractCommand.execute(AbstractCommand.java:223) [org-keridwen-core-messaging-3.0.14.jar:na]
at org.keridwen.core.messaging.DefaultBundleController$CallableCommand.call(DefaultBundleController.java:267) [org-keridwen-core-messaging-3.0.14.jar:na]
at java.util.concurrent.FutureTask.run(FutureTask.java:266) [na:1.8.0_202]
at java.util.concurrent.ThreadPoolExecutor.runWorker(ThreadPoolExecutor.java:1149) [na:1.8.0_202]
at java.util.concurrent.ThreadPoolExecutor$Worker.run(ThreadPoolExecutor.java:624) [na:1.8.0_202]
at java.lang.Thread.run(Thread.java:748) [na:1.8.0_202]